PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_10.105
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 221aa    MW: 24600.2 Da    PI: 8.2684
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_10.105genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00147597123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ C++ F ++  L  H++ H
  evm.model.supercontig_10.105 75 FSCNFCHRKFYSSQALGGHQNAH 97
                                  89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.59E-672102No hitNo description
PROSITE profilePS5015711.21975102IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MADTETNQRT KQLPHEEDDA VNEEADLKLD LSLYSSKEYS SQELNLIDSF DHQDKNFSET  60
PPHDQDNQTA EPRVFSCNFC HRKFYSSQAL GGHQNAHKRE RTLAKRGGNR VTGAAGFSFG  120
NPNSYSILPL HGSLGIQLHS VIHKPSFSSS TFTVAWPSTA RPPATGRLGN LQNIVPSTAR  180
FRRSLNGFSS GTEIIGGYRW DNHLKTKQDE LKKLDLSLKL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_10.105
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906522.11e-164zinc finger protein 1
TrEMBLA0A2I4GYX21e-48A0A2I4GYX2_JUGRE; zinc finger protein 1-like
STRINGevm.model.supercontig_10.1051e-164(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-31zinc-finger protein 1