PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_10.113
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 169aa    MW: 19019.3 Da    PI: 9.1357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_10.113genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83e-19754253
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                                  +y+GVr+++ +g+Wv+eIr+p     +  +r++lg+f tae+Aa+a+++a++ +
  evm.model.supercontig_10.113  7 RYRGVRQRH-WGSWVSEIRHP-----TlkTRIWLGTFETAEDAARAYDEAARLM 54
                                  69******9.**********9.....445*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.85E-34666No hitNo description
SuperFamilySSF541714.05E-21765IPR016177DNA-binding domain
PROSITE profilePS5103221.18764IPR001471AP2/ERF domain
PfamPF008475.9E-12756IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-34764IPR001471AP2/ERF domain
SMARTSM003802.8E-41770IPR001471AP2/ERF domain
PRINTSPR003672.6E-11819IPR001471AP2/ERF domain
PRINTSPR003672.6E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPTLKT RIWLGTFETA EDAARAYDEA ARLMCGSKAR  60
TNFPYDPINS SSSSSSKLLS ATLAAKLHKC HMASLQVPNK KSHHEPRYTR FANNGGMAGK  120
SSEKGNGREE SQSNSQVQLK ELEEDHVQQM IEELLDYGSM ELCYVTST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-18864663ATERF1
3gcc_A3e-18864663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_10.113
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906523.11e-125ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-70ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1R3J7C77e-79A0A1R3J7C7_9ROSI; Uncharacterized protein
TrEMBLB9SMV28e-79B9SMV2_RICCO; DNA binding protein, putative
STRINGevm.model.supercontig_10.1131e-125(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-50ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]