PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1024.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 511aa    MW: 56000.7 Da    PI: 5.5565
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1024.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12352395755
                                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+Lq
  evm.model.supercontig_1024.1 352 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKELQ 395
                                   79*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-17348419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-10351395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-15351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-16352406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.49E-14352399No hitNo description
CDDcd048731.10E-6467508No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MLPRVTGVVW MEDREEGHSS SWRRNNEVTN TNCGMAESKD EITSVVTFKS MFDVGDDWYA  60
ANNSMHNHRD MRDVDFSSNL GDPDNLLLQP VDSSASCSPS SSMFNNLDPF QLHYFLSPKP  120
TLPSFLNVAP NNPLENGIDL AEIAFLESQA TNASSTLFNR GSGALSNFTD LISSSQITAP  180
NMCSEPQFST TRMLQLPEAS AGFTGFRGFD ENSGNTLFTN RSKLLRPLEE FPSTGAQPTI  240
FQKRAALRKS LSDSGYNFGI LGAGSDQLLN GKDRDEGKTE MGEKTMNMGN GYVLDDASVD  300
GSGLNYDSDE LVDHSKVEET GKNGGNSSNA NSTVTGGDQK GKRKGMPAKN LMAERRRRKK  360
LNDRLYMLRS VVPKISKMDR ASILGDAIEY LKELQQKIRD INKELESTLP GSSLAPTPTS  420
SFHPLTPTAT ALTSRIKDEI CPSSLPSPNG QPAKVEVRIR EGRAVNIHMF CGRRPGLLLS  480
TMRALDNLGL DIQQAVISCF NGFAMDIFRA E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-14347404663Transcription factor MYC2
5gnj_B4e-14347404663Transcription factor MYC2
5gnj_E4e-14347404663Transcription factor MYC2
5gnj_F4e-14347404663Transcription factor MYC2
5gnj_G4e-14347404663Transcription factor MYC2
5gnj_I4e-14347404663Transcription factor MYC2
5gnj_M4e-14347404663Transcription factor MYC2
5gnj_N4e-14347404663Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341359KRKGMPAKNLMAERRRRKK
2353360ERRRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897166.10.0transcription factor ICE1-like
TrEMBLA0A1W6E0010.0A0A1W6E001_HEVBR; ICE-like protein 1
STRINGevm.model.supercontig_1024.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-116bHLH family protein