PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_103.34
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family YABBY
Protein Properties Length: 131aa    MW: 14678.7 Da    PI: 9.9976
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_103.34genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY154.31.1e-47312436170
                         YABBY  36 tvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvi 116
                                   +vrCGhC++llsvn+  + q+ + ++   +  k+++  e      + k+  +++++ + s       +  ++e+pr+pp i
  evm.model.supercontig_103.34   3 AVRCGHCANLLSVNMGASLQTFPLHDP--QLQKPHVSSE-----YSSKEFGSSSKCGRFS-----AFQPIEHEAPRMPP-I 70 
                                   7****************9999999885..2233333333.....3333333333333222.....23467899***999.9 PP

                         YABBY 117 rPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                                    PPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  evm.model.supercontig_103.34  71 PPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 124
                                   9***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-513124IPR006780YABBY protein
SuperFamilySSF470951.27E-868117IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.3E-573116IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MFAVRCGHCA NLLSVNMGAS LQTFPLHDPQ LQKPHVSSEY SSKEFGSSSK CGRFSAFQPI  60
EHEAPRMPPI PPPEKRQRVP SAYNRFIKEE IQRIKASNPD ISHREAFSTA AKNWAHFPHI  120
HFGLKLDGNK *
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_103.34
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3807106e-64FQ380710.1 Vitis vinifera clone SS0ACG37YP03.
GenBankFQ3847026e-64FQ384702.1 Vitis vinifera clone SS0AAG11YI03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892665.12e-91putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB01e-56YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A061GUT12e-72A0A061GUT1_THECC; Plant-specific transcription factor YABBY family protein isoform 1
STRINGevm.model.supercontig_103.348e-93(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Representative plantOGRP22101236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.17e-39YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]