PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_104.5
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family YABBY
Protein Properties Length: 126aa    MW: 14067.2 Da    PI: 10.6773
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_104.5genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1142.5e-35311532166
                        YABBY  32 fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvp 113
                                   + vt+ CGhC +lls ++ +     + +             +l+ ++++l+  +++++s  + +ss+   e++ + ++   
  evm.model.supercontig_104.5   3 NNAVTIVCGHCGKLLSFDVGVL----PPKPA-----------QLQISNKQLRGEESESSSRCKRISSK--AEHQPKTIS--- 64 
                                  688*************998764....33332...........33344444444444444444444432..233333333... PP

                        YABBY 114 pvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166
                                     +  ekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWah+P++
  evm.model.supercontig_104.5  65 --PQAMEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSAAAKNWAHLPRM 115
                                  ..3567*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.6E-402115IPR006780YABBY protein
SuperFamilySSF470951.3E-863113IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.105.1E-669113IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MLNNAVTIVC GHCGKLLSFD VGVLPPKPAQ LQISNKQLRG EESESSSRCK RISSKAEHQP  60
KTISPQAMEK RQRVPSAYNR FIKEEIQRIK ANNPDISHRE AFSAAAKNWA HLPRMYPPMG  120
SRNMV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_104.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892489.13e-89protein YABBY 2-like isoform X1
SwissprotQ10FZ71e-33YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A1Q3B7Z85e-37A0A1Q3B7Z8_CEPFO; YABBY domain-containing protein
STRINGevm.model.supercontig_104.57e-89(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.14e-30YABBY family protein