PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_106.63
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family LBD
Protein Properties Length: 210aa    MW: 22614.8 Da    PI: 7.9691
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_106.63genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260964e-302103197
                        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 
                                   +C++C++lr++C+++C+l++++     p++q++++ +v+k+FG++ ++++++a+p+++r+++++sl++eA  ra +Pv Ga
  evm.model.supercontig_106.63   2 SCNGCRILRKGCSENCMLRQCLqwldsPQAQANATVFVAKFFGRAGLMSFISAVPQSQRPALFQSLLFEAVGRAVNPVGGA 82 
                                   6******************************************************************************** PP

                        DUF260  77 vgvilklqqqleqlkaelall 97 
                                   vg++++++++++q+++e++l+
  evm.model.supercontig_106.63  83 VGLLWTGNWHVCQSAVETVLR 103
                                   ***************998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.4661107IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-262100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSCNGCRILR KGCSENCMLR QCLQWLDSPQ AQANATVFVA KFFGRAGLMS FISAVPQSQR  60
PALFQSLLFE AVGRAVNPVG GAVGLLWTGN WHVCQSAVET VLRGGVLQPL PEFYGAGPIP  120
DGDDCSESGI EVFRPVKADS RSVKRKRWDD DVAKFGSKDV LLSLGPESPE YRRAVSPSEE  180
SETTTLGSGS STNCSVVRGS ERPLLRLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_106.63
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892365.11e-152LOB domain-containing protein 38-like
SwissprotQ9SN232e-68LBD38_ARATH; LOB domain-containing protein 38
TrEMBLB9SND03e-85B9SND0_RICCO; LOB domain-containing protein, putative
STRINGevm.model.supercontig_106.631e-151(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2310744
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-70LOB domain-containing protein 38