PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_107.31
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HSF
Protein Properties Length: 316aa    MW: 34876.2 Da    PI: 4.7535
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_107.31genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.8e-36121032102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+
  evm.model.supercontig_107.31  12 FLTKTYQLVDDHAIDDVISWNDEGTTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFS 83 
                                   9*****************************************************************99.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F++g+k+ll++i+r+k 
  evm.model.supercontig_107.31  84 NDCFRRGEKRLLCEIQRRKI 103
                                   *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-568101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.62E-359101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.7E-379101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.7E-201235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.1E-3212101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-205062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAPPPRTLPT PFLTKTYQLV DDHAIDDVIS WNDEGTTFIV WNPTVFARDL LPKYFKHNNF  60
SSFVRQLNTY GFRKVVPDRW EFSNDCFRRG EKRLLCEIQR RKISTPAATP GTAMAQVTVA  120
AMVIPTAKPL ISPSNSGEEQ VTSSNSSPTR AVPSGAMATE LMEENEKLRK ENVQLNKELA  180
EMKSLCNNIF SLMSNYAGSQ PEGSMPSSNT GSESGNEGVR ALDLMPEGKG FSGDGETEMG  240
NLSPMLFGVP IGTKRGREDE DGVAEMEIEM EMELQLQQPG GEMKSETCDC GGRNGDNPET  300
PWLRQVHRAN QRVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-24210120129Heat shock factor protein 1
5d5v_B3e-24210120129Heat shock factor protein 1
5d5v_D3e-24210120129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_107.31
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892093.10.0heat stress transcription factor B-2a
SwissprotQ9SCW41e-101HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A1R3JSR51e-138A0A1R3JSR5_9ROSI; Heat shock factor (HSF)-type, DNA-binding protein
STRINGevm.model.supercontig_107.310.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.17e-92heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]