PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_108.62

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

LBD

Protein Properties

Length: 170aa MW: 18470.8 Da PI: 8.5914

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_108.62	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.8	2.2e-44	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ evm.model.supercontig_108.62 11 PCAACKFLRRKCLPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLHEVMPHQREDAVNSLAYEAEARMKDPVYGCVGAIS 91 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallke 99 lq+q+++l+ el+++++ evm.model.supercontig_108.62 92 VLQRQVMKLQRELDATNA 109 ***********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.494	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.6E-44	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MASSSGYSNS PCAACKFLRR KCLPDCIFAP YFPPEEPQKF ANVHKIFGAS NVSKLLHEVM 60 PHQREDAVNS LAYEAEARMK DPVYGCVGAI SVLQRQVMKL QRELDATNAD LMRFAACNES 120 FPTTTQQFGR RSGHGGPNSS FDAHSTGSGF YYPNSQWNNG PGGGRGKGI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-63	2	119	2	118	LOB family transfactor Ramosa2.1
5ly0_B	2e-63	2	119	2	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_108.62

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021892012.1	1e-126	LOB domain-containing protein 25
Refseq	XP_021892013.1	1e-126	LOB domain-containing protein 25
Swissprot	Q8L8Q3	1e-71	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	B9GI56	4e-86	B9GI56_POPTR; Uncharacterized protein
STRING	evm.model.supercontig_108.62	1e-125	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-74	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_108.62

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]