PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_111.55
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 259aa    MW: 28939.7 Da    PI: 8.6747
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_111.55genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013828323
                                  ETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                                  C++C+++F +   +  H+r+H
  evm.model.supercontig_111.55  8 CKICNRRFANGKAMGGHMRSH 28
                                  *******************99 PP
2zf-C2H215.26.2e-05153175123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ C+k+F++   L  H  +H
  evm.model.supercontig_111.55 153 FRCETCKKRFTSYQALAGHRASH 175
                                   89*****************9998 PP
3zf-C2H214.30.00012198220123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kCp C+k+F++   L  H ++H
  evm.model.supercontig_111.55 198 FKCPLCSKVFKSGQALGGHKKVH 220
                                   89************999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.265633IPR007087Zinc finger, C2H2
SMARTSM003550.21628IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-7728IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.866153180IPR007087Zinc finger, C2H2
SuperFamilySSF576676.67E-10153220No hitNo description
PfamPF139129.8E-9153176IPR007087Zinc finger, C2H2
SMARTSM003550.012153175IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429198220IPR007087Zinc finger, C2H2
PfamPF139122.0E-10198220IPR007087Zinc finger, C2H2
SMARTSM003550.0082198220IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDKQQRICKI CNRRFANGKA MGGHMRSHFC KLPIPPKPKP TNHGGPKPPS SSSSVLSFPV  60
DRQSDTESPR NPTRRRSKRL RKSVSKLVQS LLGRESVSSV SQTFSDIEEV AMCLLMLSKD  120
KWVEEEVDDE DDDDVDDGDD DGYESSCVNG VKFRCETCKK RFTSYQALAG HRASHKNKNK  180
KVQKEEKMNV NGEGKKLFKC PLCSKVFKSG QALGGHKKVH FSYLNISKSC NHDDHDEVSQ  240
VELSSICNTD MCDPVNTP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_111.55
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891854.11e-176zinc finger protein ZAT1-like
TrEMBLA0A2I4G8765e-56A0A2I4G876_JUGRE; zinc finger protein ZAT4-like
STRINGevm.model.supercontig_111.550.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16232814
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.13e-25C2H2-like zinc finger protein