PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_114.51
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NF-YB
Protein Properties Length: 134aa    MW: 14114.9 Da    PI: 5.7265
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_114.51genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB85.27.7e-273179149
                         NF-YB  1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse 49
                                  vreqdr+lPian+srimkk+lPan+ki+kdaketvqecvsefisf+ts+
  evm.model.supercontig_114.51 31 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSD 79
                                  69*********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.82E-171879IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.7E-252878IPR009072Histone-fold
PfamPF008084.5E-163778IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAEQQAQGQG APASPGGGSH ESGDHSPRSN VREQDRYLPI ANISRIMKKA LPANGKIAKD  60
AKETVQECVS EFISFITSDF LYAPTIFIVV GAKLVGANFS LSIGGFSEDT LDSDKLSCKS  120
SVEFIGQSCK TLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-213179149Transcription factor HapC (Eurofung)
4g92_B2e-213179149Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_114.51
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891559.18e-51nuclear transcription factor Y subunit B-8-like isoform X1
RefseqXP_021891561.18e-51nuclear transcription factor Y subunit B-8-like isoform X1
SwissprotQ8VYK44e-32NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A067EJC84e-41A0A067EJC8_CITSI; Uncharacterized protein
TrEMBLA0A0R0KT727e-41A0A0R0KT72_SOYBN; Uncharacterized protein
TrEMBLA0A445LE507e-41A0A445LE50_GLYSO; Nuclear transcription factor Y subunit B-8 isoform A
STRINGevm.model.supercontig_114.512e-93(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2606233
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-29nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]