PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_114.55
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family AP2
Protein Properties Length: 491aa    MW: 54364.2 Da    PI: 7.5975
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_114.55genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.7e-17158207155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  evm.model.supercontig_114.55 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDKAAIKFRG 207
                                   78*******************......55************************997 PP
2AP241.53.4e-13250300155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV+ +k  grW+A+    p   g +k+++lg f+++ +Aa+a+++a+ k +g
  evm.model.supercontig_114.55 250 SKYRGVTLHK-CGRWEARMGQfP---G-KKYVYLGLFDSEIDAARAYDKAAIKCNG 300
                                   89********.7******88877...3.6**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-9158207IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-16158217IPR016177DNA-binding domain
CDDcd000188.18E-14159217No hitNo description
SMARTSM003805.7E-32159221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-17159216IPR001471AP2/ERF domain
PROSITE profilePS5103217.82159215IPR001471AP2/ERF domain
PfamPF008471.6E-8250300IPR001471AP2/ERF domain
CDDcd000184.80E-24250310No hitNo description
SuperFamilySSF541716.02E-16250309IPR016177DNA-binding domain
SMARTSM003809.0E-31251314IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-15251308IPR001471AP2/ERF domain
PROSITE profilePS5103215.185251308IPR001471AP2/ERF domain
PRINTSPR003674.8E-6252263IPR001471AP2/ERF domain
PRINTSPR003674.8E-6290310IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MLDLNLGTAS SSDSVDVFSD KLLQLSPATQ MESSGSFNSS IVNAEATGDD DSCSNTHPLV  60
YSFDILKTND EYQDSTTRNK KTVRVHAHEA DDTHDRTIQF FPVSGIGASG TSSLSSNTRQ  120
LLDLGCRVVE YGIPLEQGIA TQQQPAKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG  180
KQVYLGGFDT AHAAARAYDK AAIKFRGVDA DINFNVSDYT EDIKQMHNFT KEEFVHILRR  240
QSTGFSRGSS KYRGVTLHKC GRWEARMGQF PGKKYVYLGL FDSEIDAARA YDKAAIKCNG  300
KEAVTNFEPS SYDGEIILEA ENEDGNQTLD LNLGIASSTA QKESNDMNDF CFQSSRNSMH  360
NDRRARIENS VIVSGKLQPP HGPATVSDHP PNWGGPNSFF PNNKERAMEK RMVPNWTWQL  420
ETRCLGSNPV PLFSAAASSG FLSSKSITPP TAANQVYHPN ATTMTVYRKH PVNLPANTTN  480
PNVSFYYCSS *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_114.55
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891499.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotB8AXC31e-106AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A385JI361e-167A0A385JI36_POPTO; Target of early activation tagged 1
TrEMBLB9MT781e-167B9MT78_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_114.550.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-111related to AP2.7