PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_115.30
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 988aa    MW: 108754 Da    PI: 5.9867
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_115.30genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.5e-17176258178
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L
  evm.model.supercontig_115.30 176 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfsMTPPA--QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRL 254
                                   99*****************************9544444..48*************************************99 PP

                                   -TT- CS
                            B3  75 kegD 78 
                                    + D
  evm.model.supercontig_115.30 255 FADD 258
                                   7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-34166258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-30168258IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-15175254No hitNo description
PfamPF023626.8E-15176257IPR003340B3 DNA binding domain
SMARTSM010199.1E-11176273IPR003340B3 DNA binding domain
PfamPF023099.3E-7874960IPR033389AUX/IAA domain
PROSITE profilePS5174526.92875959IPR000270PB1 domain
SuperFamilySSF542777.55E-7888953No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 988 aa     Download sequence    Send to blast
MKMPANGAGP VSATAAPNPA EESKSSIFFF LVSRKTNKKI EGMIESPGLT NRFMTHGVAA  60
AVGGEKKSIN PELWQACAGP LVNLPAAGTH VVYFPQGHSE QVAASMKKDV DAQIPNYPNL  120
PSKLLCLLHN VTLHADLETD EVYAQMTLQP VPSFDKDALL RSDLSLRTNK PQTEFFCKTL  180
TASDTSTHGG FSVPRRAAEK IFPSLDFSMT PPAQELVARD LHDNVWTFRH IYRGQPKRHL  240
LTTGWSLFVS GKRLFADDES SDLENVFKRS MPWDDLCVRD TQALPGLSLV QWMNMQQNTS  300
LANSVQQNYI NSLSGSVLQN LGGTDLSRQL NFSTPQIPQA SNLQFNAQRL PQQAQHLDQL  360
PKLPSTMLPL GSVMQPQQQL SDITQQARQN IITQTLPSSQ VQAQILQPQT LVQGNNILQQ  420
QLSSHQLSRN LPQNMQPQQQ PQQQQQLQQQ QQQQQQNMVA LNQQQNLTQP QLSDQVNQHL  480
QMSDSQIQLQ LLQKLQQQQQ AILAQQSTLQ QPAQLPQLQD PQRQLLDASQ SYPRSVVPSQ  540
MMEIPNAATT SLPQSNVIPN QMTKSNSQTN IRFSQTPQQL KLQQQQSSGF SELPGNVGLC  600
STVTTNQLSM NGSSMMTGAA GAGQSVITDD VPSCSTSPST NNCPNVQTLV SNRASKNTTL  660
GEDMAQSSAM LLNPNALETV SSNVNMVKDL PQKSDVKPSL NISKSQSQGF LAPQTYLNGN  720
APHMDYLDTS SSTSVCLSQN DIHLQTNNNS LTYNPQSMLM RDPNQDGEVQ ADLRNNIPYG  780
SNVDGQLAVP MNHDSLLTKG IGGLAKDFSN TLSSGGMLAN YESSKDAQQE LSSSIVSQSF  840
GVPDMTFNSI DSTINDASFL NRSTWAPPPQ FQRMRTYTKV YKRGAVGRSI DITRYSGYDE  900
LKQDLARRFG IEGQLEDRGR IGWKLVYVDH ENDVLLVGDD PWEEFVNCVR CIKILSPQEV  960
QQMSLDGDFG NSVLQNQACS SSDNGNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-886325845240Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_115.30
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891444.10.0auxin response factor 19-like
SwissprotQ0D9R71e-110ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A061GQQ50.0A0A061GQQ5_THECC; Auxin response factor
STRINGevm.model.supercontig_115.300.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162291013
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-101auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]