PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_116.38
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 261aa    MW: 30221 Da    PI: 6.5118
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_116.38genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-16956148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd++l +++++ G g W++++   g++R++k+c++rw++yl
  evm.model.supercontig_116.38  9 KGAWTAEEDDRLRKCIEKNGEGKWHRVPLAAGLNRCRKSCRLRWLNYL 56
                                  79********************************************97 PP
2Myb_DNA-binding49.97.4e-1662107148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T++E +l ++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  evm.model.supercontig_116.38  62 RGKFTADEVDLMIRMHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 107
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.259456IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-20659IPR009057Homeodomain-like
SuperFamilySSF466891.03E-277103IPR009057Homeodomain-like
SMARTSM007172.7E-13858IPR001005SANT/Myb domain
PfamPF002493.0E-15956IPR001005SANT/Myb domain
CDDcd001673.21E-91156No hitNo description
PROSITE profilePS5129424.62357111IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2360110IPR009057Homeodomain-like
SMARTSM007179.5E-1561109IPR001005SANT/Myb domain
PfamPF002494.3E-1462107IPR001005SANT/Myb domain
CDDcd001672.43E-1064107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAASLELTKG AWTAEEDDRL RKCIEKNGEG KWHRVPLAAG LNRCRKSCRL RWLNYLRPNI  60
NRGKFTADEV DLMIRMHKLL GNRWSLIAGR LPGRTANDVK NYWNTHLRKK ASNCFLNKND  120
GKDLHVVKVN AIKPQPRVFS KNLVSHEGKS SFIVDHNQEH LILNQDNLYF QPLMASTDQS  180
DNEISWWQSL VDDKQMDHIT LSSSTSAFEL NSDHFIDKNF DYVEVDNIII NDDPTVVHTE  240
EDEEENIRIL TSLDIDFWNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2261111105MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-22611155159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-22611155159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_116.38
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891335.11e-176transcription factor MYB75-like
SwissprotQ9FNV93e-62MY113_ARATH; Transcription factor MYB113
TrEMBLA0A4D6PQ764e-77A0A4D6PQ76_9MAGN; R2R3-MYB transcription factor
STRINGevm.model.supercontig_116.380.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-64myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]