PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_116.88
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 244aa    MW: 26656.7 Da    PI: 5.8436
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_116.88genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05108130123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C + Fs++  L  H++ H
  evm.model.supercontig_116.88 108 FSCNYCQRKFSTSQALGGHQNAH 130
                                   89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-4106134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.39E-6106135No hitNo description
PROSITE profilePS5015711.801108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MMKPIIDLEV EANSENDSDV CSQVASNLSM HETSYSAAAA PSNESLSIRS SLANPESNPQ  60
RVCLNLALYF NSNEPETRDS AGLAVSSTSE SSNEPALRTT AAAIPRVFSC NYCQRKFSTS  120
QALGGHQNAH KRERSLAKRA MRYANLASLP FTATPFRSLG IKAHSSVHQN LAIPIRPNEI  180
RSGARFEHEY HFGLPIFLEE EQGEMLWPGS FREVADHQAA GNSSLNFMEV NLEDSAPDLT  240
LKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_116.88
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891400.11e-179zinc finger protein 4-like
TrEMBLU5FH755e-94U5FH75_POPTR; C2H2 family protein
STRINGevm.model.supercontig_116.881e-179(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66722643
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-40zinc finger protein 4