PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_117.94
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 115aa    MW: 12879.9 Da    PI: 11.63
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_117.94genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.1e-1166110554
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  evm.model.supercontig_117.94  66 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 110
                                   99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-1559114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.33E-1059115No hitNo description
PROSITE profilePS5088816.52661110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-1562114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-866110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-867115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MAGLFPAFGQ IQTHSIRPPP PPPPPAPQLH QTFHSQPTPA TVAAASHPPT IRPRVRARRG  60
QATDPHSIAE RLRRERIAER MKALQELVPS CNKTDRAAML DEIVDYVKFL RLQVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17075RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_117.94
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891265.18e-78transcription factor UNE12-like
SwissprotQ9ZUG98e-37BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A314YM145e-57A0A314YM14_PRUYE; Transcription factor UNE12-like isoform X2
STRINGevm.model.supercontig_117.943e-77(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.39e-29bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]