PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_118.23
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 160aa    MW: 18254.9 Da    PI: 8.9653
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_118.23genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.82e-1484109126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +++++C+++++tG+Ck+G+rCkF H+
  evm.model.supercontig_118.23  84 PGQAECDYYMKTGECKFGERCKFDHP 109
                                   5789*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.1E-783110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.42283111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-783112IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-1285109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-689109IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MAMCRVEKEE VIRAIEGRRR EQNNNRTNKI IIEENDMDKE LTTLHIAINY GVRMMQRIRQ  60
QSEMFIYVKP DVLGVAPAIY PQRPGQAECD YYMKTGECKF GERCKFDHPI DRTLSLSKQA  120
CQLSIKLTLA GLPRRENDAI EARNSGKKDA YSKSGGTSH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_118.23
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGevm.model.supercontig_118.231e-116(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2124855
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.14e-28floral homeotic protein (HUA1)