PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_120.27

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 168aa MW: 18835.1 Da PI: 8.2325

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_120.27	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1.1e-09	54	94	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++++P +K++ +++L +A++Y+k L evm.model.supercontig_120.27 54 ARERRHRISDRFKILQSMVPGG-----TKMDTVSMLDEAIQYVKFL 94 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.447	45	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.81E-14	50	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-12	51	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.52E-13	51	98	No hit	No description
SMART	SM00353	1.5E-12	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-7	54	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MDQDYYFSAT YHNPNSSSSS GSVSSSVTNK EKKKGGMKKS KGVKLSTDPQ SVAARERRHR 60 ISDRFKILQS MVPGGTKMDT VSMLDEAIQY VKFLKTQIWI HQNMINWVDL DDPSFLVNNA 120 SLHPHQNIYA NPDLDPLVQY SSQLAPLPDS CFQTHPNISN YDACINH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_120.27

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021891039.1	1e-123	transcription factor bHLH140
Swissprot	Q9M041	1e-32	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A2I4HT54	2e-52	A0A2I4HT54_JUGRE; transcription factor bHLH140-like
STRING	evm.model.supercontig_120.27	1e-123	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15290	14	18
Representative plant	OGRP8941	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	2e-32	APRATAXIN-like

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_120.27

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]