PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_120.33
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 371aa    MW: 41130.7 Da    PI: 8.0119
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_120.33genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61e-3165118255
                       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   prlrWtp+LH rFv+ave+LGG+e+AtPk +l+ m++kgL+++hvkSHLQ+YR+
  evm.model.supercontig_120.33  65 PRLRWTPDLHLRFVHAVERLGGQERATPKLVLQQMNIKGLSIAHVKSHLQMYRS 118
                                   8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-2961119IPR009057Homeodomain-like
PROSITE profilePS5129412.14561121IPR017930Myb domain
SuperFamilySSF466892.33E-1463119IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-2265120IPR006447Myb domain, plants
PfamPF002491.4E-966117IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEGSGGTQCS KTSHSNPNQG ESSEQSEEND DVCNKLRNGG SSSNSTVEEN EKKPMVRPYV  60
RSKMPRLRWT PDLHLRFVHA VERLGGQERA TPKLVLQQMN IKGLSIAHVK SHLQMYRSKK  120
MDEPGQAIAD NKYLVESGDG NIYNLSQLPM LKGYNQSQGS PFRYGESSWC NQESLTNTGS  180
CSSWGFINAF RPGSLVAGRI YGGHNIISNN SPCSIGSSLS NSHCASQTHE QYHLSTYTKS  240
WQSEYKANQS DQLNQPQAKM EDCKSIKGFI NGPSSLSGLN QYNTKENKTV KRKALACNLD  300
LDLSLRLTPT SLININHGRS RNLEVEDEDD NDLSLSLYSP SSVKLSRLKQ GVEEQNEEMA  360
RRASTLDLTI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1766120357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1766120357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1766120357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1766120357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_120.33
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150373e-37AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891040.10.0two-component response regulator ORR22
TrEMBLA0A061ERX51e-104A0A061ERX5_THECC; Myb-like HTH transcriptional regulator family protein, putative isoform 1
STRINGevm.model.supercontig_120.330.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-69G2-like family protein