PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1213.3
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 392aa    MW: 43155 Da    PI: 8.614
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1213.3genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.91.5e-17179226355
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   ++hne ErrRRdriN+++ +L++l+P+a      K +Ka++L ++++Y+k+Lq
  evm.model.supercontig_1213.3 179 ATHNESERRRRDRINQKMKTLQKLVPNA-----SKTDKASMLDEVIDYLKQLQ 226
                                   69*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.476176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-20179248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-15179226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-19180237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-17180230No hitNo description
SMARTSM003532.6E-18182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MLKFRSNYEV AELTWENGQL AMHGLLPPTK PTWVRSNGTL ESIVHQAAFH DHQLPPPNII  60
PSMVASSGTA RYEESSGQVP VVTKKRTRSE SGTCLRKNFE EDDGRLMQCA SASGTFGRDD  120
HDTTMMTWAS YESPRSLKMK VTDDDSACHD GSGNQDEDRE TREVTGRSSL SRRNIRAAAT  180
HNESERRRRD RINQKMKTLQ KLVPNASKTD KASMLDEVID YLKQLQAQVQ MMSMRSMPQM  240
MMQQQLHMSM LARMGMAAAA GVGLAMDINP MVTAGTPFPH PAAALPSLLH PPHVAAAVAS  300
AAPTFLPPTP FAMPTAPLLR PVDQPNINQD ANNNASSVPI MAAPYSSFLA QQSMNMEMYN  360
KMAAMYRQQM NQTTQRTGCP AQSSRVQGSD N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1213.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894498.10.0transcription factor PIF7-like
TrEMBLA0A061G4L11e-121A0A061G4L1_THECC; DNA binding protein, putative isoform 4
STRINGevm.model.supercontig_1213.30.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-42bHLH family protein