PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_124.4
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HSF
Protein Properties Length: 417aa    MW: 47317.7 Da    PI: 5.1362
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_124.4genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.1e-35141052102
                                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEE CS
                 HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkh 83 
                                  Fl+k+y++++d+++++++sws+ ++sf v+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF++
  evm.model.supercontig_124.4  14 FLSKTYDMVDDPSTDSIVSWSQGNKSFTVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFAN 86 
                                  9***************************************************************9998.........***** PP

                                  SXXXXXXXXXXXXXXXXXX CS
                 HSF_DNA-bind  84 ksFkkgkkellekikrkks 102
                                  + F +g+ +ll++i+r+k 
  evm.model.supercontig_124.4  87 DDFVRGQPHLLKNIHRRKP 105
                                  ****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.25E-3610103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.3E-6410103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.4E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.5E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDDNQGSSNA LPPFLSKTYD MVDDPSTDSI VSWSQGNKSF TVWNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFV RGQPHLLKNI HRRKPVHSHS LQNLHGQTAL  120
SESERQSLKD EIEKLKGDKE LLLLELQRHE QEQQGFDSQM QLIKERLQHM EQRQRKMVSF  180
VAQVLQKPGL SFITPQLETN DRKRRLPRIG YLYGEVSSED NQMGINETII RENVDGSSAV  240
SSSMDQLGSS KKKSKNIDQL EQLESSLVFW ENIVHDAGDA FIKLNSNIEV VESTSCAESP  300
AMSCIRLNID TRPKSPVIDM NTEPAAVVAP EPVASEEQPA GTTTVPPTGV NDVFWEQFLT  360
ENPGSTDAQE VQSERKDSDG RKNENKPADH GKFWWNIKNV NNLAEQMGHL TPAERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-24610313120Heat shock factor protein 1
5d5u_B2e-24610322129Heat shock factor protein 1
5d5v_B2e-24610322129Heat shock factor protein 1
5d5v_D2e-24610322129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200205DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_124.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890826.10.0heat stress transcription factor A-4a
SwissprotO494031e-136HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A1Q3CF810.0A0A1Q3CF81_CEPFO; HSF_DNA-bind domain-containing protein
STRINGevm.model.supercontig_124.40.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Representative plantOGRP52351020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-123heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]