PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_124.41
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 187aa    MW: 21200.2 Da    PI: 9.2005
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_124.41genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.15e-111464654
                                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
                           HLH  6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54
                                  + +Er+RR +++s  ++L +l+P+  +ka +k  ls  e Le+A  YIk+L
  evm.model.supercontig_124.41 14 KTVERNRRIHMKSLCFKLSSLIPSqHFKACDKEhLSQQEQLEHAATYIKEL 64
                                  679*********************8888888888***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.85E-6869No hitNo description
PROSITE profilePS5088810.671864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-101279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-111279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-71464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKKRSSDSSK LDRKTVERNR RIHMKSLCFK LSSLIPSQHF KACDKEHLSQ QEQLEHAATY  60
IKELRERIEE LKGRKEEAIM EESGRGKYRS NINDGGLSLP MVELRDMGSS IEVNVISGLN  120
KNFMSYQVIR ILQEEGADVV SASFNTVGDK IFHTFHAQVK ITRVGVETSR VSQRLEEMIC  180
LGSANI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_124.41
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890867.11e-135transcription factor bHLH162-like
TrEMBLA0A2C9VR571e-75A0A2C9VR57_MANES; Uncharacterized protein
STRINGevm.model.supercontig_124.411e-134(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-23bHLH family protein