PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_126.30
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 186aa    MW: 21684.7 Da    PI: 9.1513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_126.30genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.3e-191764148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  r +WT+eEd++l+++++ +G+++Wk+ a+  g++R++k+c++rw +yl
  evm.model.supercontig_126.30 17 REAWTAEEDQKLAQVIRIHGPRRWKSLAALAGLNRCGKSCRLRWMNYL 64
                                  789*******************************************97 PP
2Myb_DNA-binding21.94e-0770107148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg+ +++E++l+++++k+lG +        ++ gRt++++k++w+++l
  evm.model.supercontig_126.30  70 RGNISEQEEDLILRLHKLLG-R--------LP-GRTDNEIKNYWNSHL 107
                                   7889999************9.5........8*.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.871268IPR017930Myb domain
SuperFamilySSF466898.58E-2315103IPR009057Homeodomain-like
SMARTSM007173.2E-151666IPR001005SANT/Myb domain
PfamPF002498.3E-181764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-241971IPR009057Homeodomain-like
CDDcd001673.15E-111964No hitNo description
PROSITE profilePS5129411.8169111IPR017930Myb domain
SMARTSM007174.1E-669109IPR001005SANT/Myb domain
PfamPF002492.0E-570107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-1572111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MPTAPASNRL NKKEINREAW TAEEDQKLAQ VIRIHGPRRW KSLAALAGLN RCGKSCRLRW  60
MNYLRPNIKR GNISEQEEDL ILRLHKLLGR LPGRTDNEIK NYWNSHLSKK ITQNGRVRKK  120
SSTTQQPEPM ETKVMITQME TTDISNSTLV GEDDHSLFDF YIEEEPINNL EWMSEFLNLD  180
HQTWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231411124128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_126.30
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890720.11e-133transcription factor MYB114-like
TrEMBLA0A1U8PPB74e-73A0A1U8PPB7_GOSHI; transcription factor MYB114-like
TrEMBLA0A2P5WPG54e-73A0A2P5WPG5_GOSBA; Uncharacterized protein
STRINGevm.model.supercontig_126.301e-135(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.11e-32myb domain protein 41