PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_129.19
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 331aa    MW: 37386.4 Da    PI: 4.7639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_129.19genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-12163206654
                                   HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                    ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  evm.model.supercontig_129.19 163 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 206
                                   589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-16160228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9163206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16164220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-4164206No hitNo description
CDDcd048730.00372256297No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MELTQVGFLE ELLAPRRESW TTFVSGLTEF FPNGSWSFDS LEDNPTLASP NNPSMAGFES  60
SFECPFSDQT YPCFVDGFTV PEIESSPFPA QEDYPSMADH DDELVLLSHH HHPDHSLEER  120
QSTCKVEMEQ SSNNVQVFNM GLCGGEKKIN KSKKLEGQPS KNLMAERRRR KRLNDRLSML  180
RSIVPKISKM DRTSILGDTI DYMKELMEKI NKLQEEKSEM GFNQINLITN LKELKPSESM  240
VRNSPKFDIE RREMDTRIDI CCATKPGLLL STVGTLEALG LEIQQCVISC FNDFSLQASC  300
SEVAEQRTLV SPEDIKQALF RNAGYGGRCL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165172ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_129.19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890417.10.0transcription factor bHLH93 isoform X1
SwissprotQ9LSL13e-94BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A1U8IV461e-167A0A1U8IV46_GOSHI; transcription factor bHLH61-like
STRINGevm.model.supercontig_129.190.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Representative plantOGRP26361130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-96beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]