PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_129.37
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 378aa    MW: 42099.6 Da    PI: 7.6089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_129.37genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64e-12200246455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  evm.model.supercontig_129.37 200 DHIVAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 246
                                   5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.313196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17200258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-10200246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-17201262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.87E-12201250No hitNo description
SMARTSM003534.7E-14202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDLSSAKWLS DLGMDEYEII HHCHMNSLAE TLTTDVADIT ALNQVHSHGS FVKQSFSSES  60
YSSYPTFNSA NETSHNSSFE RPAKQLKITA CTTNSWNSTT TASKNDRVLP RASSSSSPTK  120
TPHLLSFENS SSNHDHQQQF YHGNMMNCTV KPKDEAGLSP MRPPCLISNS GYCNDNTNHA  180
GKVNQGMKRA YSKIQSHAQD HIVAERKRRE KLSQRFIALS AIVPGLKKMD KASVLGDAIK  240
YVKQLQERVK VLEEQTKKRT MESVVMVKKY QLSADDDSSS CDENFHGQCC DAALPEVEAR  300
VSDKDVLVRV HCENQKGILV KVLNEIEKIH LSILNSSVLP FGNSTLDITI IALKGDEFDM  360
TVKDLVKDLR LALLKYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13200255863Transcription factor MYC2
5gnj_B2e-13200255863Transcription factor MYC2
5gnj_E2e-13200255863Transcription factor MYC2
5gnj_F2e-13200255863Transcription factor MYC2
5gnj_G2e-13200255863Transcription factor MYC2
5gnj_I2e-13200255863Transcription factor MYC2
5gnj_M2e-13200255863Transcription factor MYC2
5gnj_N2e-13200255863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERKRRE
2205210RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_129.37
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890458.10.0transcription factor bHLH25-like
TrEMBLA0A061DHY31e-139A0A061DHY3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGevm.model.supercontig_129.370.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-78bHLH family protein