PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_13.253
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 230aa    MW: 26055 Da    PI: 5.0739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_13.253genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-17117167255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+++AeIrdp   + k  r++lg+f++  +Aaka++ a+ k++g
  evm.model.supercontig_13.253 117 HYRGVRRRP-WGKFAAEIRDP---NrKGSRIWLGTFDSDVDAAKAYDCAAFKFRG 167
                                   8********.**********9...6566**********99************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-30116176IPR001471AP2/ERF domain
CDDcd000181.62E-29116175No hitNo description
SMARTSM003806.4E-35117181IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-22117176IPR016177DNA-binding domain
PfamPF008475.1E-12117167IPR001471AP2/ERF domain
PROSITE profilePS5103224.487117175IPR001471AP2/ERF domain
PRINTSPR003676.8E-13118129IPR001471AP2/ERF domain
PRINTSPR003676.8E-13157177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
THNQIQFIPT SSFLLIFLSY ISLSFSMATL EESSTLELIR QHLLEDFSTD LDFDSSFLSA  60
LQFNFNPQYK QEEPDSPISD THNQFLPEIF LHVTSPEPGV SASCTEIMEP DGEERKHYRG  120
VRRRPWGKFA AEIRDPNRKG SRIWLGTFDS DVDAAKAYDC AAFKFRGRKA ILNFPLEAGK  180
CGPPATTGRK RRREKKGVES PERRWVEEEE DGDQSSPVSG KRVTASEDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-26116176161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192RKRRR
2188194RKRRREK
3188195RKRRREKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_13.253
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5329900.0JX532990.1 Carica papaya ethylene-responsive transcription factor 3 (ERF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905462.11e-169ethylene-responsive transcription factor ERF106
SwissprotQ9LY053e-56EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLT1QCY41e-147T1QCY4_CARPA; Ethylene-responsive transcription factor 3
STRINGevm.model.supercontig_13.2531e-169(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-42ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]