PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_13.48
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TCP
Protein Properties Length: 410aa    MW: 46388.1 Da    PI: 7.6981
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_13.48genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.83.8e-381502963133
                          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec 73 
                                   k+drhski T++g+RdRR+Rls+e+a++fF Lqd+LG+ k+skt+eWLl qa ++ik+l+++           ++ss sec
  evm.model.supercontig_13.48 150 CKRDRHSKINTAKGPRDRRMRLSLEVAKEFFGLQDMLGYEKASKTVEWLLIQARTEIKKLVKSfpgrtnyscstGASSTSEC 231
                                  69**************************************************************999999998766666888 PP

                          TCP  74 eaesssssasnsssg.......kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                  e  s   ++++++ +       +  ++++k k+ +k+a  +  lak+ rakar+rar rtrek  ++
  evm.model.supercontig_13.48 232 EVISGILNSGTHKRNkaketdiSLLAKEKKIKQLRKRA--FCPLAKDLRAKARERARARTREKFWNR 296
                                  55555555554444445555422222222333444444..699********************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-39151292IPR005333Transcription factor, TCP
PROSITE profilePS5136930.695151209IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.451275292IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MFPSISINND INNTDLFSYE IDQSILLKPF LSEISIPNSK QLDDPLLSFF QLPSPFIHYF  60
DFELQDPEPN FLQPSHSNHD EILLNQQQQH GQSGLIMMAD HTASETVSNM ADSSKNTHHS  120
FNNGSFSASK DCRTESTKQV ISTPDRKRSC KRDRHSKINT AKGPRDRRMR LSLEVAKEFF  180
GLQDMLGYEK ASKTVEWLLI QARTEIKKLV KSFPGRTNYS CSTGASSTSE CEVISGILNS  240
GTHKRNKAKE TDISLLAKEK KIKQLRKRAF CPLAKDLRAK ARERARARTR EKFWNRKLDE  300
ESKLRGEDQA KENYMNNQLA AAGSLSDHFE VAGDQESGTQ RHSNVNLSPK MIVPEVEEEI  360
INPQKGHLGI QEAAMVDESL VIMDKYWSPS SIDLNYLHHN GISQEVSSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_13.48
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905457.10.0transcription factor TCP12
RefseqXP_021905458.10.0transcription factor TCP12
STRINGevm.model.supercontig_13.480.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.21e-26TCP family protein