PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_13.83
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 229aa    MW: 25445 Da    PI: 8.1704
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_13.83genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.5e-154796255
                          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                 +y GVr++  +grWvAeI+d s    + r +lg+f+ +eeAa a++ a++ l+g
  evm.model.supercontig_13.83 47 RYLGVRQRA-SGRWVAEIKDSS---LKLRLWLGTFDRPEEAALAYDVAARILRG 96
                                 799***999.7*********42...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-2746103No hitNo description
PROSITE profilePS5103219.00647104IPR001471AP2/ERF domain
PfamPF008475.9E-94796IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-1847104IPR016177DNA-binding domain
SMARTSM003807.3E-2947110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-2647104IPR001471AP2/ERF domain
PRINTSPR003672.4E-64859IPR001471AP2/ERF domain
PRINTSPR003672.4E-67086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MECHKDQIMN PPSSNNPSDH HHHQTSSPIF HNDQNRSRRR NHDGVKRYLG VRQRASGRWV  60
AEIKDSSLKL RLWLGTFDRP EEAALAYDVA ARILRGRNAK TNFHGGAGVD NATHVFCSRF  120
VRNPRVHQLL LRHARSSSLG TTPVSIDDRG VEMGNRVDSA DKTESIVEET IFCSSFSGSD  180
HDDGERGCWN YSKFSGSCKV YSSVIVAPSF SDPSCSSSIT GREKEEDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_13.83
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905489.11e-170ethylene-responsive transcription factor 1B-like
TrEMBLB9RE642e-49B9RE64_RICCO; Uncharacterized protein
STRINGevm.model.supercontig_13.831e-169(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17770810
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-21related to AP2 11