PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_13.95
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MIKC_MADS
Protein Properties Length: 173aa    MW: 20001.1 Da    PI: 10.6517
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_13.95genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.74.8e-26959151
                                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                 krien + rqvtfskRrngilKKA+ELS+LCdae a++ifs++gk + ++s
  evm.model.supercontig_13.95  9 KRIENPTSRQVTFSKRRNGILKKAFELSILCDAELALLIFSPSGKAFQFAS 59
                                 79*******************************************999985 PP
2K-box75.21.8e-2581171898
                        K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                                  ++ ++++e+++ e++ Lk+ i nL+   Rhl Ged+++L +k+L++Le+qL+ +++++Rs+K ++l ++++ l++   +l+e
  evm.model.supercontig_13.95  81 NQRTTTTEYWRCEIEELKRSIINLEARTRHLCGEDITTLGVKDLKHLERQLKIGVERVRSRKRRILSDNVNLLKRTYCALKE 162
                                  4678899******************999****************************************************** PP

                        K-box  90 enkaLrkkl 98 
                                  en+ L+kk+
  evm.model.supercontig_13.95 163 ENTHLQKKV 171
                                  *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.244161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-31290IPR002100Transcription factor, MADS-box
CDDcd002651.64E-37276No hitNo description
PRINTSPR004043.0E-29323IPR002100Transcription factor, MADS-box
PfamPF003195.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-2284171IPR002487Transcription factor, K-box
PROSITE profilePS5129712.51487172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGRGKVELKR IENPTSRQVT FSKRRNGILK KAFELSILCD AELALLIFSP SGKAFQFASH  60
DLDRTIAKYR NHMGLSNSAY NQRTTTTEYW RCEIEELKRS IINLEARTRH LCGEDITTLG  120
VKDLKHLERQ LKIGVERVRS RKRRILSDNV NLLKRTYCAL KEENTHLQKK VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-23172172MEF2 CHIMERA
6byy_B7e-23172172MEF2 CHIMERA
6byy_C7e-23172172MEF2 CHIMERA
6byy_D7e-23172172MEF2 CHIMERA
6bz1_A6e-23172172MEF2 CHIMERA
6bz1_B6e-23172172MEF2 CHIMERA
6bz1_C6e-23172172MEF2 CHIMERA
6bz1_D6e-23172172MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_13.95
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905677.11e-123MADS-box transcription factor 23-like isoform X3
TrEMBLA0A2R6PSH82e-85A0A2R6PSH8_ACTCH; MADS-box transcription factor (Fragment)
STRINGevm.model.supercontig_13.951e-124(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1763078
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.14e-46MIKC_MADS family protein