PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_130.35
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Trihelix
Protein Properties Length: 401aa    MW: 44707.1 Da    PI: 5.2587
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_130.35genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.45.9e-2669141274
                      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                                   W ++e+++Li++rre++  ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk k+++++ + +
  evm.model.supercontig_130.35  69 WVQDETRCLITFRREVDGLFNTSKSNKHLWEQISAKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHHRERINGR 141
                                   ****************************************************************998765322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-460130IPR009057Homeodomain-like
PROSITE profilePS500908.1361125IPR017877Myb-like domain
SMARTSM007172.5E-465127IPR001005SANT/Myb domain
CDDcd122039.17E-2767132No hitNo description
PfamPF138371.5E-1868158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MYLQPEKPRP LDLAATEEDG EMMLEVVTND GLPPHHHPVV IGGGPPGGGE SSGSEELEIK  60
APKKRAETWV QDETRCLITF RREVDGLFNT SKSNKHLWEQ ISAKMRDKGF DRSPTMCTDK  120
WRNLLKEFKK AKHHRERING RDGSCGSVKM LYYKELEDLL CDRTKNAMNN VINAISPFPA  180
APATTPTAAN SSYIHFSDKG LEDANIPYGS AEAGDRSAVN LERQLDHESD PLALTTTDAV  240
TAGGLPPWSW RETPGSGGEG NSYCGRVISV KYGEYTRRIG IDGTADAIKE AIKSAFRLRT  300
KRAFWLEDED QVVRTLDRDM PIGTYTLHLD EGITIKICLY HDSDRITTEE ATLYTEDDLR  360
NLLARRGLSG LREIDSYRSV DTLDDLRPGA VYQDARLMGE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A4e-4563155186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_130.35
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890392.10.0trihelix transcription factor GT-4-like isoform X1
SwissprotQ9FX531e-148TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A1U7ZCD81e-178A0A1U7ZCD8_NELNU; trihelix transcription factor GT-1-like
STRINGevm.model.supercontig_130.350.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Representative plantOGRP59331318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-144Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]