PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_131.40

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Dof

Protein Properties

Length: 234aa MW: 25049.6 Da PI: 8.3649

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_131.40	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.4	4.1e-40	19	79	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds+ntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn k+s evm.model.supercontig_131.40 19 EQEQLKCPRCDSNNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNIPVGGGSRKNTKRS 79 57899****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	14	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-33	21	77	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.45	23	77	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	25	61	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MQDPASTFHQ AMMKPQFPEQ EQLKCPRCDS NNTKFCYYNN YNLSQPRHFC KSCRRYWTKG 60 GALRNIPVGG GSRKNTKRSS NNPKRHANSS DPNPTRKAPE PAPPSLSTAT SQQMASNQGV 120 LGSGLDQDPN RVYGLSVEQD RKVLDMGMNG SFSSLLASNG QFGSILEGLN PNGSSLKMVQ 180 MGDLGENLGS GHGLDLVSDS GIGLQGNNNG NDNGGGESYC WSGSSNGWPD LAI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00199	DAP	Transfer from AT1G51700	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_131.40

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857273	2e-34	DQ857273.1 Glycine max Dof22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021890177.1	1e-172	dof zinc finger protein DOF3.1-like
Swissprot	O82155	1e-46	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	B9MWQ5	3e-87	B9MWQ5_POPTR; Uncharacterized protein
STRING	evm.model.supercontig_131.40	1e-171	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	6e-49	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_131.40

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]