PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_131.71
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TCP
Protein Properties Length: 532aa    MW: 59940.3 Da    PI: 6.7795
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_131.71genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.21.3e-33169294289
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................s 66 
                                   +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++                 
  evm.model.supercontig_131.71 169 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDKLAELppwnpetlnittntttA 249
                                   79**************************************************************99888888776533221 PP

                           TCP  67 sssasec.eaesssssasnsssg...........................k 89 
                                         +  +++s++ +++++++                            
  evm.model.supercontig_131.71 250 ------TkAPNTSKNHQEQPRIDdreyqfqlhhggttammdnvaasaasgG 294
                                   ......222333333333333334444444444444455554444433331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.3E-32169289IPR005333Transcription factor, TCP
PROSITE profilePS5136933.745171229IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MELETLNGRG FWERQQEEKY YQEYIKVLTL DPQRNHYPHH HHLQQHHQQQ RQQEEEEEEE  60
EEEEEEEEEE EEKESQRKHL LYILNTTQAP QNQLLYGGEE LDIPPQPPKK RSYRPSISPS  120
STSFAQQATQ YARKMENSHH QAATSSRLGL RNAGGEIVEV QGGHIVRSTG RKDRHSKVCT  180
AKGPRDRRVR LSAHTAIQFY DVQDRLGYDR PSKAVDWLIK KAKAAIDKLA ELPPWNPETL  240
NITTNTTTAT KAPNTSKNHQ EQPRIDDREY QFQLHHGGTT AMMDNVAASA ASGGSSGGSS  300
GRRTTPLMGN EVQNLQHQQQ TQMSENPDTG SSFLPPSLDS DAIADTIKSF FPMGASTEPP  360
SSSIQFQSYP PDLLSRTSSQ SQDLRLSLQS FQEPMLLQHQ AQTQAHHTDS LGFAFQHGFR  420
AKKRSTTASP TSRPLPPLIL AIDGTINIRS KSFPFHQSTY LLELLFEKRT SVFSVDLIIS  480
STGADPVGGA ESISSWSTIK YVKVNLAGGT MKGELDEHNY KQKLTYWKKN T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-19176229154Putative transcription factor PCF6
5zkt_B1e-19176229154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_131.71
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890224.11e-169transcription factor TCP4
TrEMBLA0A2P5X0B61e-125A0A2P5X0B6_GOSBA; Uncharacterized protein
STRINGevm.model.supercontig_131.710.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24082771
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.11e-40TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3