PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_132.31
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 229aa    MW: 25322.2 Da    PI: 9.986
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_132.31genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-193179355
                           AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  ++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++++g
  evm.model.supercontig_132.31 31 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARSFRG 79
                                  8*******.**********883....5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-123079IPR001471AP2/ERF domain
CDDcd000181.40E-173089No hitNo description
SMARTSM003807.7E-383093IPR001471AP2/ERF domain
PROSITE profilePS5103223.4593087IPR001471AP2/ERF domain
PRINTSPR003672.8E-103142IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-223188IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-313188IPR001471AP2/ERF domain
PRINTSPR003672.8E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MRRGRATTKQ TDLTAKPIAP DSTNAVKEIR FRGVRKRPWG RFAAEIRDPW KKTRVWLGTF  60
DSAEDAARAY DAAARSFRGP KAKTNFPTTQ SSSIPPPVYP QYQGHNRHHR HPQEDGGFSK  120
YEPVQVNRPT SSSMSSTVES FSGPRIAVSA SAVAPRAHKR RPVQQPPLQP DDCHSDCDSS  180
SSVVDDDDCV LTSSFRTVFP FDLNLPPPQT THPVDFSGDD LHATALRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1930871472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_132.31
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890173.11e-167ethylene-responsive transcription factor 3-like
SwissprotQ9SXS86e-46ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A0V0HV081e-72A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGevm.model.supercontig_132.311e-167(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.17e-31ethylene responsive element binding factor 3