PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_1383.2

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 172aa MW: 19220 Da PI: 5.7784

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_1383.2	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19	2.6e-06	116	138	8	30
HHHHHHHHHHHHHHHHHCTSCCC CS HLH 8 rErrRRdriNsafeeLrellPka 30 +Er+RR++i++ f++L l+ ++ evm.model.supercontig_1383.2 116 AERKRRKKIKDMFQNLHGLMLSN 138 8*****************99995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.91E-5	100	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-4	107	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MEDIEWDEPG FWDFFNLDSN ALETQIKYPM DPPPPPPPPC FTSDLSLNPP TVPSPDLDQP 60 QAADPAAAAV GEKEKGEKLI GADEKIIKKS GDDEEKKKKG KKEGKAEADK QTRIWAERKR 120 RKKIKDMFQN LHGLMLSNPH GMMRPVPPKQ SYSTNPDHAL IALLLLLLLR D*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_1383.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021887311.1	2e-42	transcription factor bHLH95-like, partial
STRING	evm.model.supercontig_1383.2	1e-121	(Carica papaya)

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_1383.2