PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_139.11
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WOX
Protein Properties Length: 233aa    MW: 26063.6 Da    PI: 8.9752
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_139.11genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85.1e-20766357
                                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                  +R+++t+eq+ +Lee++++  r+p+a+++++++++l    +++ ++V++WFqN++a++++
  evm.model.supercontig_139.11  7 SRWCPTPEQVMILEEMYRSgIRTPNASQIQQITSHLssygKIEGKNVFYWFQNHKARDRQ 66
                                  7*****************99*************************************996 PP
2Wus_type_Homeobox121.14.4e-39667364
             Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                                  ++RW+PtpeQ++iLee+y+sG+rtPn+++iq+it++L++yGkie+kNVfyWFQN+kaR+rqk
  evm.model.supercontig_139.11  6 SSRWCPTPEQVMILEEMYRSGIRTPNASQIQQITSHLSSYGKIEGKNVFYWFQNHKARDRQK 67
                                  79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.236267IPR001356Homeobox domain
SMARTSM003891.8E-4471IPR001356Homeobox domain
SuperFamilySSF466891.33E-11570IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-7766IPR009057Homeodomain-like
PfamPF000469.7E-18766IPR001356Homeobox domain
CDDcd000865.58E-5868No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSPSGSSRWC PTPEQVMILE EMYRSGIRTP NASQIQQITS HLSSYGKIEG KNVFYWFQNH  60
KARDRQKMRR KLAKQLLLQQ QLLHHQYILQ QNQAKHGCHL GNNYLFGVLQ SPASASGSTS  120
AFQNQLSCCN VNLSSAAAPY NFLPHQGSGA DREDNHKQMM SHMWMVDKIP DKSAVDQMME  180
KTSMMRMNGC DWTMMDHVDP ALAPPPGLSS AASSSTRPPL ETLQLFPVNP SN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_139.11
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889750.11e-175WUSCHEL-related homeobox 3-like
TrEMBLA0A1R3J9591e-58A0A1R3J959_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_139.111e-175(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74802642
Representative plantOGRP55801121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-43WOX family protein