PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_14.134
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 98aa    MW: 10867.2 Da    PI: 9.8609
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_14.134genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.56.3e-194412259
                                  EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                                  rsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+
  evm.model.supercontig_14.134  4 RSYYKCTSAGCSVRKHVERASTDPKAVITTYEGKHNHD 41
                                  9************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182907.72E-15343IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-18443IPR003657WRKY domain
PROSITE profilePS5081123.089443IPR003657WRKY domain
SMARTSM007742.1E-9442IPR003657WRKY domain
PfamPF031061.4E-13441IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
YIYRSYYKCT SAGCSVRKHV ERASTDPKAV ITTYEGKHNH DVPAARNSSH NTVSNNASQL  60
KPQQAVAGKY PLLRDMDFGS SDKRPVLLQL KEEKITV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-214443878Probable WRKY transcription factor 4
2lex_A3e-214443878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_14.134
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905342.11e-62serine/threonine-protein kinase STE7 homolog, partial
SwissprotQ9ZQ704e-23WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0L9U2B11e-46A0A0L9U2B1_PHAAN; Uncharacterized protein
TrEMBLA0A140H8S73e-46A0A140H8S7_MANES; WRKY transcription factor 73
TrEMBLA0A445DBK01e-48A0A445DBK0_ARAHY; Uncharacterized protein
STRINGevm.model.supercontig_14.1343e-67(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2767433
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-25WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]