PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_14.220
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 245aa    MW: 28438.9 Da    PI: 7.9869
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_14.220genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding636e-201663148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd ll+++v+ +G g+W+++ar  g++R++k+c++rw +yl
  evm.model.supercontig_14.220 16 KGPWTPEEDRLLIEYVNFHGDGRWSSVARSAGLNRSGKSCRLRWVNYL 63
                                  79********************************************97 PP
2Myb_DNA-binding54.23.2e-1769113147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg +T++E+ ++v++++++G++ W+tIar+++ gRt++++k++w+++
  evm.model.supercontig_14.220  69 RGQMTPQEEGIIVELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 113
                                   899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.7491167IPR017930Myb domain
SuperFamilySSF466893.63E-3213110IPR009057Homeodomain-like
SMARTSM007171.8E-171565IPR001005SANT/Myb domain
PfamPF002496.3E-191663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-241770IPR009057Homeodomain-like
CDDcd001677.02E-131863No hitNo description
PROSITE profilePS5129420.54168118IPR017930Myb domain
SMARTSM007173.8E-1468116IPR001005SANT/Myb domain
PfamPF002498.8E-1569113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2371117IPR009057Homeodomain-like
CDDcd001671.22E-972114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MIERMHWGAQ EQGCRKGPWT PEEDRLLIEY VNFHGDGRWS SVARSAGLNR SGKSCRLRWV  60
NYLRPGLKRG QMTPQEEGII VELHALWGNK WSTIARYLPG RTDNEIKNYW RTHFKKKDKS  120
SKKQEKPKAQ TLKQQQRQQE VQPQDKESMK RVILPQVASH EVMKMTGEQG RQEVDFTYDS  180
MEDQCIPNVM SPDAASWSDH SAVDEGFLWS GLWLWDQDDP YSRMDHTCNY DKAVNPISDF  240
YSGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26161177107B-MYB
1h8a_C5e-261611727127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_14.220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905371.10.0transcription factor MYB2-like
TrEMBLA0A061EFJ93e-90A0A061EFJ9_THECC; Myb domain protein 121
STRINGevm.model.supercontig_14.2200.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.12e-72myb domain protein 121