PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_14.230

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

G2-like

Protein Properties

Length: 75aa MW: 8766.49 Da PI: 5.765

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_14.230	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	32.8	1.5e-10	6	35	27	56
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRla 56 +t k+i+e+++ +gLt e+vkSH Q+YRl+ evm.model.supercontig_14.230 6 TTSKQIKEIIQAEGLTSEQVKSHHQRYRLH 35 689*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-8	6	37	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-8	7	35	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
MIRLTTTSKQ IKEIIQAEGL TSEQVKSHHQ RYRLHHDHVR QFCHHDVIQS NFTDDDDDDD 60 NDANQHVVKA FEEN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_14.230

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021905360.1	3e-20	uncharacterized protein LOC110820240
STRING	evm.model.supercontig_14.230	5e-47	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15410	7	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25790.1	1e-07	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_14.230