PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_144.7
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HD-ZIP
Protein Properties Length: 220aa    MW: 25530.4 Da    PI: 4.7142
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_144.7genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.6e-192983256
                                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                 +++++f+++q++ Le++Fe+++ +  +++ e A++lgL+ rqV +WFqN+Ra++k
  evm.model.supercontig_144.7 29 KNKRRFSDDQIKSLETMFESESRLEPRKKVEVARELGLQPRQVAIWFQNKRARWK 83
                                 67889*************************************************9 PP
2HD-ZIP_I/II121.63.8e-3930120292
                  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                  +krr+s++q+k+LE++Fe+e++Lep++Kve+areLglqprqva+WFqn+RAR+k+kqlEkdy+ L+++y++l+++ e+L+ke
  evm.model.supercontig_144.7  30 NKRRFSDDQIKSLETMFESESRLEPRKKVEVARELGLQPRQVAIWFQNKRARWKSKQLEKDYNILRTTYNNLASQFENLKKE 111
                                  79******************************************************************************** PP

                  HD-ZIP_I/II  84 veeLreelk 92 
                                  +++L  +l+
  evm.model.supercontig_144.7 112 KQALIIQLE 120
                                  ****98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-19786IPR009057Homeodomain-like
SuperFamilySSF466893.8E-181787IPR009057Homeodomain-like
PROSITE profilePS5007117.9452585IPR001356Homeobox domain
SMARTSM003891.6E-162789IPR001356Homeobox domain
PfamPF000463.2E-162983IPR001356Homeobox domain
CDDcd000861.34E-133486No hitNo description
PRINTSPR000318.5E-65665IPR000047Helix-turn-helix motif
PROSITE patternPS0002706083IPR017970Homeobox, conserved site
PRINTSPR000318.5E-66581IPR000047Helix-turn-helix motif
PfamPF021839.6E-1485122IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MLDGEETEGF GCNMDGVGII RKIKKNKNKN KRRFSDDQIK SLETMFESES RLEPRKKVEV  60
ARELGLQPRQ VAIWFQNKRA RWKSKQLEKD YNILRTTYNN LASQFENLKK EKQALIIQLE  120
RQNELMMQKA GEESKCCSQT ESDNNNPCES EVKTRSEVGL GLVSEDDSGA INTDYFGLEQ  180
EEPIRLMSSQ EDDWGNFESD NLFDHSTNCS SCQWWDFWS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_144.7
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889570.11e-161homeobox-leucine zipper protein ATHB-12
SwissprotP468972e-60ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A1R3KNH45e-74A0A1R3KNH4_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_144.71e-160(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-58homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]