PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_1481.3

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

G2-like

Protein Properties

Length: 163aa MW: 18155.4 Da PI: 8.9064

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_1481.3	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	35.2	2.7e-11	114	163	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r++W+++L +F +v+ L ++A Pk+ l +m+v+ Lt +v+SH Q evm.model.supercontig_1481.3 114 KQRMVWNHDLELEFTAVVSAL-RDKEARPKSTLSFMDVPELTQPQVASHKQ 163 79*****************.8899*********************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.15E-6	111	163	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-11	112	163	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.6E-10	114	163	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MDITLKALPD GVCFCLEKPI SPQNVRDVWH HGIKKNRSNE IGSIKEGENG NGVGENQAKA 60 NPQSIPVSNR KEPNARPRNG QSKVRKIRSA FENTSVNAAW EEGEEDKGGN CAKKQRMVWN 120 HDLELEFTAV VSALRDKEAR PKSTLSFMDV PELTQPQVAS HKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_1481.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021893863.1	1e-105	putative two-component response regulator-like APRR6
STRING	evm.model.supercontig_1481.3	1e-118	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8222	3	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.1	2e-11	response regulator 1

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_1481.3