PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_149.2

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

SBP

Protein Properties

Length: 202aa MW: 22399.9 Da PI: 9.1378

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_149.2	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.6	5.7e-41	115	192	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCe+hska++v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ evm.model.supercontig_149.2 115 RCQVEGCDVALVNAKDYHRRHKVCEMHSKAAKVVVLGIEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 192 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.3E-34	112	177	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.334	113	190	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.54E-39	114	195	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.3E-32	116	189	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MEVGGNIFSN SIGNNWDIWE LNVNASASGN LYTPQPQTAG STNPQVYQHS LYCGDGSRLH 60 PDPHLMCLKL GKRQYFEDAN TPVVERLKRG KSYYGLSAGG SGGVVCSATA VPVPRCQVEG 120 CDVALVNAKD YHRRHKVCEM HSKAAKVVVL GIEQRFCQQC SRFHVVSEFD DSKRSCRRRL 180 AGHNERRRKS SHDSVAKNSS QX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-31	116	189	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_149.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021889329.1	1e-151	squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	4e-43	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A1Q3B117	3e-76	A0A1Q3B117_CEPFO; SBP domain-containing protein
STRING	evm.model.supercontig_149.2	1e-150	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15613	9	14
Representative plant	OGRP97	17	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	6e-39	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_149.2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]