PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_15.87
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 298aa    MW: 33402.1 Da    PI: 9.1494
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_15.87genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.82.4e-102465399
                                 EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                           B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                                 +k++++ ++t+GW++F++++ L+ gDf+vF +dg+s f   vk+f k
  evm.model.supercontig_15.87  2 EKGDQGLTITNGWQHFADEHSLEFGDFLVFIYDGSSHF--DVKIFGK 46
                                 5778899**************************99999..9999976 PP
2B338.42.2e-122022891299
                                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE CS
                           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sef 90 
                                  ++  + +p++ ++++g+k   + +++l d++g++W vk+++++ + r++l++ W+ F +   L  +D +vF+  l++   ++
  evm.model.supercontig_15.87 202 SKYVMNIPNSLVNACGIK--LNSEVILSDQDGKKWPVKVKVWGDG-RITLATAWSLFHENTILVKNDRCVFElvLSKGcVSK 280
                                  445688*********977..5569***************999996.789999********************5444667888 PP

                                  ..EEEEE-S CS
                           B3  91 elvvkvfrk 99 
                                  e++v+++rk
  evm.model.supercontig_15.87 281 EMKVRIIRK 289
                                  899999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.434147IPR003340B3 DNA binding domain
PfamPF023621.9E-7346IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-11554IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-12549IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-71044No hitNo description
SuperFamilySSF1019361.06E-14191289IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.842191290IPR003340B3 DNA binding domain
CDDcd100173.30E-10192288No hitNo description
Gene3DG3DSA:2.40.330.103.7E-16192289IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.9E-5194290IPR003340B3 DNA binding domain
PfamPF023622.6E-10203289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEKGDQGLTI TNGWQHFADE HSLEFGDFLV FIYDGSSHFD VKIFGKNGCK KESHFASQVK  60
EEEDKETEQI PIRTTRASKQ KYLETVLRRV KKSGKKGCQK ESHFASQVKE EEDEETEKIP  120
VRTTQASKQK YSETVLRSVK KSGDESLISP LSMLPGSLLT GPLLSGSSEV NQFRFQTSSQ  180
EVQAFKAPAH LPPFEATITQ SSKYVMNIPN SLVNACGIKL NSEVILSDQD GKKWPVKVKV  240
WGDGRITLAT AWSLFHENTI LVKNDRCVFE LVLSKGCVSK EMKVRIIRKG KQKAEQV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_15.87
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905132.10.0putative B3 domain-containing protein At5g66980 isoform X2
RefseqXP_021905133.10.0putative B3 domain-containing protein At5g66980 isoform X2
STRINGevm.model.supercontig_15.870.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Representative plantOGRP8585614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-19B3 family protein