PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_150.42
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family DBB
Protein Properties Length: 318aa    MW: 35637 Da    PI: 6.1767
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_150.42genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.91.8e-07534635
                      zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHk 35
                                  C+ ++++e+++fC  ++  lC+ C    H+
  evm.model.supercontig_150.42  5 CDMCDKEEASIFCSADEAALCDACDRRVHH 34
                                  *************************99974 PP
2zf-B_box27.46.8e-095492238
                      zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                                  e + C+ ++e ++ lfC++++  lC++C l +H+   Ht
  evm.model.supercontig_150.42 54 ESPLCDICQERRALLFCKEDRAILCRECDLPIHQAneHT 92
                                  5789*****************************767765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.993147IPR000315B-box-type zinc finger
SMARTSM003367.5E-6447IPR000315B-box-type zinc finger
CDDcd000211.07E-4533No hitNo description
PfamPF006431.5E-5534IPR000315B-box-type zinc finger
PROSITE profilePS5011910.4853100IPR000315B-box-type zinc finger
SMARTSM003364.9E-1653100IPR000315B-box-type zinc finger
PfamPF006431.5E-75492IPR000315B-box-type zinc finger
CDDcd000214.19E-1056100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MKIWCDMCDK EEASIFCSAD EAALCDACDR RVHHANELAR QHLRFSLVIP NLRESPLCDI  60
CQERRALLFC KEDRAILCRE CDLPIHQANE HTQKHNRFLL TGVKLSASSS SSSSSLNPSS  120
SCSNRSAATM GAEFNNFQSP MKRAQSTSSP CELFSSPSMA VAATNYTVHD YNKVMSDGGS  180
IPTSSISEYL METLPGWRVE DLLDPSAAFN CFSKTHDGDD TSTHRGEDFE SNTMSYYFSS  240
PEYLAVRVPQ VKSNLHPIPQ TKQELENYRR TLTLSPEERS SGVVATSQCI LGRFYREKVL  300
FCSDSEKDFQ RKEMKIA*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_150.42
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889250.10.0B-box zinc finger protein 20-like isoform X1
SwissprotQ0IGM75e-69BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A2N9GXM42e-81A0A2N9GXM4_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_150.420.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Representative plantOGRP29841130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.14e-66DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]