PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_150.46

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

SRS

Protein Properties

Length: 248aa MW: 27532.3 Da PI: 8.6276

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_150.46	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	196.4	9.2e-61	13	161	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqs 84 g+a+CqdCGnqakkdC+++RCRtCCk++gf+C+th+kstWvp+++rr+r +q+ ++++ + ++++ ++++ +++ evm.model.supercontig_150.46 13 GSARCQDCGNQAKKDCMYRRCRTCCKNKGFQCQTHIKSTWVPSYRRRQRYNQMLHHHHHHLTPSSSSIDHHHHP---AENP 90 6789*******************************************8877766555555444444443333...2333 PP DUF702 85 alsstklssaeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 + +++ + +s++ le+ ++P ev+s+avfrcv+vss dd g +++aYqtavsigGhvfkGiLydqG+++ evm.model.supercontig_150.46 91 KRLRQNSQYLTSSSGLEKGDFPGEVRSTAVFRCVQVSSTDDhGIKQYAYQTAVSIGGHVFKGILYDQGPDD 161 33333334455667899999*****************8899**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.8E-57	14	160	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.4E-26	17	58	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.9E-26	111	159	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MGQGGDYGFL FGGSARCQDC GNQAKKDCMY RRCRTCCKNK GFQCQTHIKS TWVPSYRRRQ 60 RYNQMLHHHH HHLTPSSSSI DHHHHPAENP KRLRQNSQYL TSSSGLEKGD FPGEVRSTAV 120 FRCVQVSSTD DHGIKQYAYQ TAVSIGGHVF KGILYDQGPD DHDRDHHHQY YSRTGQETVL 180 QQRPNYEANV GALEAASGDD GRIAYRSAAS VEALIIPSSA ATSTCPIFSF SAFMSGTPFS 240 SSSNPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_150.46

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021889300.1	0.0	protein SHI RELATED SEQUENCE 3
Swissprot	Q9SD40	2e-47	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A061E6J8	4e-58	A0A061E6J8_THECC; Lateral root primordium protein-related
STRING	evm.model.supercontig_150.46	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9188	26	38
Representative plant	OGRP1313	15	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	5e-49	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_150.46

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]