PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_152.56
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TALE
Protein Properties Length: 153aa    MW: 17945.2 Da    PI: 7.663
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_152.56genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.56.3e-10801142155
                                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   k +yps++++  LA+++gL+++q+ +WF N+R ++
  evm.model.supercontig_152.56  80 KWPYPSEQQKLALAESTGLDQKQINNWFINQRKRH 114
                                   569*****************************985 PP
2ELK42.71.1e-143455122
                           ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                                  ELK qLlrKYsgyLgsLkqEF+
  evm.model.supercontig_152.56 34 ELKGQLLRKYSGYLGSLKQEFM 55
                                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011882.8E-83455IPR005539ELK domain
PROSITE profilePS5121311.1743454IPR005539ELK domain
PfamPF037891.9E-113455IPR005539ELK domain
PROSITE profilePS5007113.11954117IPR001356Homeobox domain
SuperFamilySSF466894.28E-2056131IPR009057Homeodomain-like
SMARTSM003899.9E-1356121IPR001356Homeobox domain
CDDcd000862.60E-1357118No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2859119IPR009057Homeodomain-like
PfamPF059208.0E-1874113IPR008422Homeobox KN domain
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MQSGCGDGID RNGSSEEEVD VNNEFIDPQA EDRELKGQLL RKYSGYLGSL KQEFMKKRKK  60
GKLPREARQQ LLDWWSRHYK WPYPSEQQKL ALAESTGLDQ KQINNWFINQ RKRHWKPSED  120
MQFVVMDATH PHYYMDNVLG NPFPMDITPT LL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14958LKQEFMKKRK
25559KKRKK
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_152.56
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889118.11e-112homeobox protein SBH1
SwissprotO222991e-89LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBLD3IWE92e-98D3IWE9_PRUPE; Class I KNOX homeobox transcription factor STM-like 2
STRINGevm.model.supercontig_152.561e-111(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.15e-89KNOX/ELK homeobox transcription factor