PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_157.44

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

HSF

Protein Properties

Length: 488aa MW: 54656.4 Da PI: 6.3586

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_157.44	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.9	9.2e-35	27	117	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl k+ye+++d++++ ++sws+n++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+ evm.model.supercontig_157.44 27 FLLKTYEMVDDSATDGIVSWSSNNHSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFA 98 9**************************************************************999......... PP ESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkk 101 ++ F k++k+ll++i+r+k evm.model.supercontig_157.44 99 NEDFVKDQKHLLKNIHRRK 117 ***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.3E-60	23	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.29E-36	23	116	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.9E-37	23	116	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.0E-30	27	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.5E-19	27	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.5E-19	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	66	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.5E-19	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MEVAAVTSSG GSVGGVGGAG GGGPAPFLLK TYEMVDDSAT DGIVSWSSNN HSFVVWNPPE 60 FARLLLPTYF KHNNFSSFIR QLNTYGFRKI DPERWEFANE DFVKDQKHLL KNIHRRKPIH 120 SHGNPHGSTV DPERAAFDEE IGTLSRDKDM LEANILRSKQ QRSAEKLQLE EMTQRLDNME 180 RRQEVLITTL EKAVRDPTFV EHLARKIEST DFSAYSKKRR LPQLEHSKPI MESSLLDNSS 240 SSRAEFGNIF HQDFSNKLRL ELSPAISDIN LVSHSTQCSN EDGESPNRKI SEGDPKDVQT 300 RTDAHSFAPD GLELSDTGTF PRKIPPNGNS RMYSLQQRLN STEEVDGHVS CHLNLTLASS 360 SVPVNKSSCP TRMPQQNQEI RKSPESIFNV ISKGSDVRGL PKKKNTPDEN TPISSSQEPQ 420 DNNQGRPAAP ARVNDLFWEQ FLTERPGSSD NEEASSTYRA NPYEEQEDRR LGHGISRNSR 480 NIDQLSL*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MEVAAVTSSG GSVGGVGGAG GGGPAPFLLK TYEMVDDSAT DGIVSWSSNN HSFVVWNPPE  60
FARLLLPTYF KHNNFSSFIR QLNTYGFRKI DPERWEFANE DFVKDQKHLL KNIHRRKPIH  120
SHGNPHGSTV DPERAAFDEE IGTLSRDKDM LEANILRSKQ QRSAEKLQLE EMTQRLDNME  180
RRQEVLITTL EKAVRDPTFV EHLARKIEST DFSAYSKKRR LPQLEHSKPI MESSLLDNSS  240
SSRAEFGNIF HQDFSNKLRL ELSPAISDIN LVSHSTQCSN EDGESPNRKI SEGDPKDVQT  300
RTDAHSFAPD GLELSDTGTF PRKIPPNGNS RMYSLQQRLN STEEVDGHVS CHLNLTLASS  360
SVPVNKSSCP TRMPQQNQEI RKSPESIFNV ISKGSDVRGL PKKKNTPDEN TPISSSQEPQ  420
DNNQGRPAAP ARVNDLFWEQ FLTERPGSSD NEEASSTYRA NPYEEQEDRR LGHGISRNSR  480
NIDQLSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-21	18	116	17	129	Heat shock factor protein 1
5d5v_B	1e-21	18	116	17	129	Heat shock factor protein 1
5d5v_D	1e-21	18	116	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_157.44

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021888950.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	0.0	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	B9GFJ0	0.0	B9GFJ0_POPTR; Uncharacterized protein
STRING	evm.model.supercontig_157.44	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10134	24	33
Representative plant	OGRP9716	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	0.0	HSF family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_157.44

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]