PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_157.5
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 564aa    MW: 60656.6 Da    PI: 7.1372
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_157.5genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.5e-09378425455
                                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  evm.model.supercontig_157.5 378 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 425
                                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-17372444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.41E-11372429No hitNo description
Gene3DG3DSA:4.10.280.105.0E-17374442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663374424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-6378425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10380430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MEKEKVVVSE GVNQTAQPIW SSSSFGMEIQ NCGMEQLPNC FFNPNWENSV DQSDPFESAL  60
SSLVSSPVTS NAAGDILPPV GGVGGGLMIN ELIGRIGNIA GSGEKSHQSY IINSNSHGGT  120
NNSCYNNPLN SPPKRNSPMM VSQIRGNLPI PGNLFPDHPN LTQFTADPGF AERAARLSCF  180
RSGMNGGTGL NGDSVGLSHG SVHRTESSKL SKVSSNQSIK LAGSLLNGQE SNKSSTQDPN  240
SDEKFSKVSR SLVPINGEFV DSRENSSVSE QIPVVESSFK GPNEGSSRKR KSISRGKAVE  300
TPSVSPSAND AKVTAENDES RAKRSKEDHS TICENEKVKP ESNGNDGNSK QGKDNSKPPE  360
PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKFLQDL VPGCNKVTGK AVMLDEIINY  420
VQSLQRQVEF LSMKLATVNP RMDFSVDTLL SKGVLQPRGS LSQSIFPVES SSTPGFPFGY  480
QPRQGMPLSN RAETQLPINS LSALLRGNPS MHLPSIDGNG EVAPQASMPW EDDLQSLVQM  540
GFGQNHAQIV HGSMAAGHMK VEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286291SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_157.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888949.10.0transcription factor bHLH78-like
TrEMBLA0A2K2BND60.0A0A2K2BND6_POPTR; BHLH family protein
STRINGevm.model.supercontig_157.50.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.17e-69bHLH family protein