PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_163.32
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 189aa    MW: 20949.2 Da    PI: 10.3688
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_163.32genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011100122123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++Cg+ Fs    L  H+r+H
  evm.model.supercontig_163.32 100 HECSICGQEFSLGQALGGHMRRH 122
                                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.364264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2214269IPR007087Zinc finger, C2H2
SuperFamilySSF576677.65E-84264No hitNo description
PfamPF139124.6E-104266IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-490123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.65E-895122No hitNo description
SMARTSM003550.079100122IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.847100122IPR007087Zinc finger, C2H2
PfamPF139125.2E-10100124IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MKRGRESEEM ESIDMAKLLI LMSQRLHYKP KIDQKLSDVN EFACKTCNRK FSSFQALGGH  60
RASHKRPKIS MGDKPISDQA ESLSLGLATT STSHVKRKIH ECSICGQEFS LGQALGGHMR  120
RHRAAINGDT SAVSVFPVLT GGPAVLKRSN SSKRVHVWLD LNLTPLENDL EFIFGKNMAP  180
KVDHRLII*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_163.32
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888628.11e-139zinc finger protein ZAT11-like
TrEMBLA0A0D2NU754e-61A0A0D2NU75_GOSRA; Uncharacterized protein
STRINGevm.model.supercontig_163.321e-138(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-51C2H2 family protein