PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_165.18
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 187aa    MW: 20650 Da    PI: 6.7768
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_165.18genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like30.86.4e-1012352851
                       G2-like 28 tPktilelmkvkgLtlehvkSHLQ 51
                                   P  +lelm+v++Ltl+hvkSHLQ
  evm.model.supercontig_165.18 12 DPEDVLELMNVEDLTLAHVKSHLQ 35
                                  599********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-81235IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MPLTLLVALK GDPEDVLELM NVEDLTLAHV KSHLQFINNI GGPSMKISYS AEKITSHHLK  60
IRVFPSDRRC LMAERECIIM SNVHHISPNS SNNPAENYIC QKEYITVEVT NVNAEKTNVS  120
FFKIFKATLE QLFAIANFVL ELLAAVFDQL LSSDKLQCAL ISMSISFVGP CSSASLSSFT  180
KVDAKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_165.18
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893794.16e-57uncharacterized protein LOC110811569
STRINGevm.model.supercontig_165.181e-134(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM383825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.22e-07G2-like family protein