PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1680.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ARR-B
Protein Properties Length: 566aa    MW: 62877.1 Da    PI: 5.1416
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1680.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.47.8e-24222275155
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   k+r +Wt+eLH++Fv++v++L G+e+A Pk+il++m+v+gL  eh+ SHLQkYRl
  evm.model.supercontig_1680.1 222 KNRFVWTNELHNKFVHVVDSL-GIEEAFPKNILHHMNVPGLRKEHISSHLQKYRL 275
                                   689******************.9*******************************8 PP
2Response_reg49.72e-17241281105
                                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEES CS
                  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvta 79 
                                   +l+ dD+p+ +++l ++++++gy +v +++ +++a  +l+e++   Dl+l D  + +md +++l+++++ + +lp++v+++
  evm.model.supercontig_1680.1  24 ILLLDDDPVCLSILSRMMRESGY-KVITTRRATDAFFILREREhlLDLVLADAHLVDMDKYQFLETMARVS-HLPVVVMST 102
                                   7999*******************.999999*****9999888778**********************9988.9******** PP

                                   TTTHHHHHHHHHTTESEEEESS--HH CS
                  Response_reg  80 hgeeedalealkaGakdflsKpfdpe 105
                                    ++e+ +l  l+ Ga+ +l+Kp+  +
  evm.model.supercontig_1680.1 103 DQDENGMLGSLQCGAEFHLVKPITWN 128
                                   **********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.1E-2219135No hitNo description
SuperFamilySSF521721.28E-2120136IPR011006CheY-like superfamily
SMARTSM004482.3E-1222134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.21623138IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.2E-1324130IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.52E-1425135No hitNo description
SuperFamilySSF466893.94E-16220279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-24221279IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-19222275IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MKRFRAVAPY SSERNGMKVD NINILLLDDD PVCLSILSRM MRESGYKVIT TRRATDAFFI  60
LREREHLLDL VLADAHLVDM DKYQFLETMA RVSHLPVVVM STDQDENGML GSLQCGAEFH  120
LVKPITWNDV KSLWQFSILR KIELSRSASS SSSSSSSSSS SSSDQGVSSS AAESLHIFNS  180
ISLELDDDEE SDANHSGSKR KQPENSSSRS SDDNSDSSIV KKNRFVWTNE LHNKFVHVVD  240
SLGIEEAFPK NILHHMNVPG LRKEHISSHL QKYRLSLKRE QVERLYFSAN LGLCQFSSNP  300
INMGGRGIYQ LLGSQKGKAP SFQPEINNIF KEHNVNRSNL QAAASVGVPF GAPAANFDVC  360
QLPSSSRAAA NFPQMSSVTQ NLVNFSDLIS GPVAAPLNYG YAFENMERDY NKYKNMIYDS  420
NNNNSSTGSN LQPMKEKGLV IGETSYNNNN NWTISGGDYL DYQLIDESTD WRALLQSIME  480
EELTPVPQPQ PVQEKVAAQP GPAPQMLHPE STPQITQPAA AAVASQQSNF EYDMFGADRY  540
GGVDGLFNML TVTNNFFDQD FNDLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16221279462ARR10-B
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911965.10.0two-component response regulator ARR14-like
STRINGevm.model.supercontig_1680.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.26e-30response regulator 1