PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1750.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 31aa    MW: 3648.44 Da    PI: 12.5595
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1750.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.12.3e-081031223
                                  ---SHHHHHHHHHHHHHHHHHH CS
                        SRF-TF  2 rienksnrqvtfskRrngilKK 23
                                   i n+s r+ tf kRr+g++KK
  evm.model.supercontig_1750.1 10 NITNNSARKATFEKRRKGLMKK 31
                                  699******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.671131IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-9131IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-71131IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-72331IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 31 aa     Download sequence    Send to blast
MTRKKVKLAN ITNNSARKAT FEKRRKGLMK K
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.28e-09M-type_MADS family protein